STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVC80_1065g114Pentatricopeptide repeat. (377 aa)    
Predicted Functional Partners:
BVC80_9083g84
Pentatricopeptide repeat.
   
  
0.633
BVC80_8939g15
Pentatricopeptide repeat.
   
   0.633
BVC80_165g9
Pentatricopeptide repeat.
  
  
 0.514
BVC80_9015g58
Zinc finger protein.
    
 
 0.481
BVC80_8709g7
Afadin/alpha-actinin-binding.
      
 0.448
BVC80_1535g10
Uncharacterized protein family UPF0061.
      
 0.448
BVC80_8903g14
Uncharacterized protein family UPF0061.
      
 0.448
BVC80_1611g36
Uncharacterized protein.
      
 0.447
BVC80_1417g1
Uncharacterized protein.
  
 
  0.400
Your Current Organism:
Macleaya cordata
NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.