STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVC80_887g80Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (437 aa)    
Predicted Functional Partners:
BVC80_437g10
ARID/BRIGHT DNA-binding domain.
   
 0.973
BVC80_8463g3
ARID/BRIGHT DNA-binding domain.
   
 0.973
BVC80_8809g29
ARID/BRIGHT DNA-binding domain.
   
 0.973
BVC80_1543g215
ARID/BRIGHT DNA-binding domain.
   
 0.973
BVC80_1821g83
Chromo domain/shadow.
   
 0.965
BVC80_8793g21
WD40 repeat.
   
 0.926
BVC80_8409g6
WD40 repeat.
   
 0.925
BVC80_1395g90
SNF2-related.
    
 0.924
BVC80_491g2
WD40 repeat.
   
 0.918
BVC80_1821g92
WD40 repeat.
   
 0.918
Your Current Organism:
Macleaya cordata
NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.