STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVC80_8905g13RNA recognition motif domain. (293 aa)    
Predicted Functional Partners:
BVC80_9043g57
Elongation factor.
   
 
 0.993
BVC80_8979g34
Brix domain.
   
   0.962
BVC80_8907g25
Brix domain.
   
   0.962
BVC80_9089g82
WD40 repeat.
   
 
 0.961
BVC80_551g18
RNA recognition motif domain.
   
  0.952
BVC80_715g52
Apoptosis-antagonizing transcription factor.
   
 
 0.948
BVC80_8875g15
WD40 repeat.
   
 
 0.947
BVC80_9083g88
WD40 repeat.
   
  
 0.941
BVC80_9041g10
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
 
 0.934
BVC80_9087g72
Bystin.
   
 
 0.933
Your Current Organism:
Macleaya cordata
NCBI taxonomy Id: 56857
Other names: M. cordata, Macleaya cordata (Willd.) R.Br.
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