Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acin_0807Hypothetical protein. (243 aa)    
Predicted Functional Partners:
Acin_0806
Biopolymer transporter exbD/tolR.
 
 
 0.967
Acin_0805
Hypothetical protein.
 
 
 0.950
Acin_0810
TonB-dependent receptor.
 
 
 0.853
Acin_0435
Hypothetical protein.
 
 
 0.813
Acin_0808
Conserved hypothetical protein.
 
     0.794
Acin_0431
Conserved hypothetical protein.
 
 
 
 0.780
Acin_0804
ABC transporter; COG1132.
     
 0.775
Acin_0434
Conserved hypothetical protein.
 
 
 0.752
Acin_0812
TonB-dependent receptor.
  
 
 0.727
Acin_0809
Hypothetical protein.
       0.635
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini RyC-MR95, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95
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