STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acin_1012Polysaccharide transporter. (481 aa)    
Predicted Functional Partners:
Acin_0484
Undecaprenyl-phosphate galactose phosphotransferase.
 
  
 0.895
Acin_0989
UDP-galactopyranose mutase; COG0562.
 
  
 0.892
Acin_0990
Exopolysaccharide biosynthesis protein; NOG43626.
 
  
 0.803
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
 
  
 0.794
ugd
UDPglucose 6-dehydrogenase; COG1004.
  
  
 0.766
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.764
rfbB
dTDP-glucose 4,6-dehydratase; COG1088; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.644
wbpP
UDP-N-acetylglucosamine 4-epimerase; COG1088.
  
  
 0.644
wecB
UDP-N-acetylglucosamine 2-epimerase; COG0381; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.563
Acin_0868
Amino acid permease; COG0531.
  
    0.448
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini RyC-MR95, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.