Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Acin_0339 | Acin_1273 | Acin_0339 | Acin_1273 | Peptidase S1/S6; COG0265. | Quinone oxidoreductase; COG0604. | 0.408 |
Acin_0339 | bcd-2 | Acin_0339 | Acin_0489 | Peptidase S1/S6; COG0265. | butyryl-CoA dehydrogenase; COG2025. | 0.417 |
Acin_1273 | Acin_0339 | Acin_1273 | Acin_0339 | Quinone oxidoreductase; COG0604. | Peptidase S1/S6; COG0265. | 0.408 |
Acin_1273 | Acin_1274 | Acin_1273 | Acin_1274 | Quinone oxidoreductase; COG0604. | Conserved hypothetical protein; COG0251. | 0.662 |
Acin_1273 | Acin_1275 | Acin_1273 | Acin_1275 | Quinone oxidoreductase; COG0604. | Phenazine biosynthesis protein; COG0384. | 0.545 |
Acin_1273 | Acin_1276 | Acin_1273 | Acin_1276 | Quinone oxidoreductase; COG0604. | GntR-family transcriptional regulator; COG1167. | 0.405 |
Acin_1273 | bcd-2 | Acin_1273 | Acin_0489 | Quinone oxidoreductase; COG0604. | butyryl-CoA dehydrogenase; COG2025. | 0.475 |
Acin_1273 | pgk | Acin_1273 | Acin_1482 | Quinone oxidoreductase; COG0604. | Phosphoglycerate kinase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. | 0.446 |
Acin_1273 | trmD | Acin_1273 | Acin_0401 | Quinone oxidoreductase; COG0604. | tRNA-(guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.478 |
Acin_1274 | Acin_1273 | Acin_1274 | Acin_1273 | Conserved hypothetical protein; COG0251. | Quinone oxidoreductase; COG0604. | 0.662 |
Acin_1274 | Acin_1275 | Acin_1274 | Acin_1275 | Conserved hypothetical protein; COG0251. | Phenazine biosynthesis protein; COG0384. | 0.543 |
Acin_1274 | Acin_1276 | Acin_1274 | Acin_1276 | Conserved hypothetical protein; COG0251. | GntR-family transcriptional regulator; COG1167. | 0.404 |
Acin_1275 | Acin_1273 | Acin_1275 | Acin_1273 | Phenazine biosynthesis protein; COG0384. | Quinone oxidoreductase; COG0604. | 0.545 |
Acin_1275 | Acin_1274 | Acin_1275 | Acin_1274 | Phenazine biosynthesis protein; COG0384. | Conserved hypothetical protein; COG0251. | 0.543 |
Acin_1275 | Acin_1276 | Acin_1275 | Acin_1276 | Phenazine biosynthesis protein; COG0384. | GntR-family transcriptional regulator; COG1167. | 0.653 |
Acin_1276 | Acin_1273 | Acin_1276 | Acin_1273 | GntR-family transcriptional regulator; COG1167. | Quinone oxidoreductase; COG0604. | 0.405 |
Acin_1276 | Acin_1274 | Acin_1276 | Acin_1274 | GntR-family transcriptional regulator; COG1167. | Conserved hypothetical protein; COG0251. | 0.404 |
Acin_1276 | Acin_1275 | Acin_1276 | Acin_1275 | GntR-family transcriptional regulator; COG1167. | Phenazine biosynthesis protein; COG0384. | 0.653 |
bcd-2 | Acin_0339 | Acin_0489 | Acin_0339 | butyryl-CoA dehydrogenase; COG2025. | Peptidase S1/S6; COG0265. | 0.417 |
bcd-2 | Acin_1273 | Acin_0489 | Acin_1273 | butyryl-CoA dehydrogenase; COG2025. | Quinone oxidoreductase; COG0604. | 0.475 |
page 1 of 2