STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acin_1290Peptidase. (437 aa)    
Predicted Functional Partners:
phoR
Two-component system sensor histidine kinase.
       0.774
resD
Two-component system transcriptional regulator; COG0745.
     
 0.666
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
     
 0.537
Acin_1289
Conserved hypothetical protein; Belongs to the UPF0342 family.
       0.475
Acin_1287
Hypothetical protein.
 
     0.470
Acin_1286
UvrD/REP helicase; ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily.
 
     0.453
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini RyC-MR95, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.