Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acin_1908Putative tail length tape measure protein. (1032 aa)    
Predicted Functional Partners:
Acin_1902
Hypothetical protein.
 
  
 0.926
Acin_1911
Phage major tail protein, TP901-1 family.
 
     0.877
Acin_1223
Conserved hypothetical protein; COG5301.
 
  
 0.872
Acin_1909
Hypothetical protein.
       0.777
Acin_1219
Hypothetical protein.
  
     0.774
Acin_1901
Hypothetical protein.
  
     0.774
Acin_1896
Hypothetical protein.
  
     0.771
Acin_2226
Conserved hypothetical protein.
  
     0.766
Acin_0276
Hypothetical protein.
  
     0.762
Acin_0728
Conserved hypothetical protein.
  
     0.762
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini RyC-MR95, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95
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