Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acin_1925Conserved hypothetical protein; NOG80608. (302 aa)    
Predicted Functional Partners:
Acin_1348
Conserved hypothetical protein; NOG85350.
 
    0.780
Acin_1981
Conserved hypothetical protein; NOG83250.
 
    0.779
Acin_1994
Conserved hypothetical protein; NOG77285.
 
    0.763
Acin_1358
Conserved hypothetical protein; NOG77285.
 
    0.760
Acin_1937
Hypothetical protein; NOG77285.
 
    0.738
Acin_1926
Virulence-related protein; NOG83538.
 
    
0.593
Acin_1924
Hypothetical protein.
       0.461
Acin_1983
Conserved hypothetical protein.
  
     0.449
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini RyC-MR95, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95
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