Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acin_2000Conserved hypothetical protein; NOG14263. (369 aa)    
Predicted Functional Partners:
Acin_1999
Conserved hypothetical protein; NOG17480.
 
     0.947
Acin_2001
Conserved hypothetical protein; NOG73630.
     0.917
Acin_1997
DNA polymerase I; NOG11122.
 
     0.865
Acin_1992
Diacylglycerol kinase; NOG47100.
 
     0.815
Acin_1991
Conserved hypothetical protein; COG0553.
 
     0.811
Acin_1363
Conserved hypothetical protein; NOG17480.
 
     0.778
Acin_1880
Conserved hypothetical protein; NOG17480.
 
     0.778
Acin_1361
DNA polymerase I; NOG11122.
 
     0.777
Acin_1878
DNA-directed DNA polymerase; NOG11122.
 
     0.777
Acin_1934
VRR-NUC domain protein; NOG47100.
 
     0.777
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini RyC-MR95, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95
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