Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acin_2001Conserved hypothetical protein; NOG73630. (103 aa)    
Predicted Functional Partners:
Acin_2000
Conserved hypothetical protein; NOG14263.
     0.917
Acin_1999
Conserved hypothetical protein; NOG17480.
 
     0.912
Acin_2002
Hypothetical protein.
       0.773
Acin_1996
Phage regulatory protein rha; COG3646.
 
     0.724
Acin_1997
DNA polymerase I; NOG11122.
 
     0.717
Acin_1931
Conserved hypothetical protein.
  
     0.698
citF
Citrate lyase alpha subunit; COG3051.
   
    0.654
Acin_1364
Conserved hypothetical protein; NOG14263.
     0.651
Acin_1990
Conserved hypothetical protein; NOG140500.
 
     0.644
Acin_1363
Conserved hypothetical protein; NOG17480.
 
     0.627
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini RyC-MR95, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95
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