Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SCL14435.1 | SCL14438.1 | GA0070624_0419 | GA0070624_0420 | Probable phosphoglycerate mutase. | Hypothetical membrane protein. | 0.601 |
SCL14435.1 | SCL14442.1 | GA0070624_0419 | GA0070624_0421 | Probable phosphoglycerate mutase. | Catechol 2,3-dioxygenase. | 0.587 |
SCL14438.1 | SCL14435.1 | GA0070624_0420 | GA0070624_0419 | Hypothetical membrane protein. | Probable phosphoglycerate mutase. | 0.601 |
SCL14438.1 | SCL14442.1 | GA0070624_0420 | GA0070624_0421 | Hypothetical membrane protein. | Catechol 2,3-dioxygenase. | 0.753 |
SCL14438.1 | SCL14445.1 | GA0070624_0420 | GA0070624_0422 | Hypothetical membrane protein. | Asparagine synthase (glutamine-hydrolysing). | 0.493 |
SCL14438.1 | SCL24706.1 | GA0070624_0420 | GA0070624_2972 | Hypothetical membrane protein. | Translation elongation factor 2 (EF-2/EF-G). | 0.532 |
SCL14438.1 | SCL33141.1 | GA0070624_0420 | GA0070624_4665 | Hypothetical membrane protein. | Ribosomal protection tetracycline resistance protein. | 0.603 |
SCL14438.1 | SCL36694.1 | GA0070624_0420 | GA0070624_5622 | Hypothetical membrane protein. | Phenazine biosynthesis protein phzE. | 0.606 |
SCL14438.1 | SCL39386.1 | GA0070624_0420 | GA0070624_6548 | Hypothetical membrane protein. | 3',5'-cyclic AMP phosphodiesterase CpdA. | 0.483 |
SCL14438.1 | SCL39575.1 | GA0070624_0420 | GA0070624_6614 | Hypothetical membrane protein. | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | 0.661 |
SCL14438.1 | fusA | GA0070624_0420 | GA0070624_0124 | Hypothetical membrane protein. | Translation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. [...] | 0.532 |
SCL14438.1 | rph | GA0070624_0420 | GA0070624_2066 | Hypothetical membrane protein. | RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.533 |
SCL14442.1 | SCL14435.1 | GA0070624_0421 | GA0070624_0419 | Catechol 2,3-dioxygenase. | Probable phosphoglycerate mutase. | 0.587 |
SCL14442.1 | SCL14438.1 | GA0070624_0421 | GA0070624_0420 | Catechol 2,3-dioxygenase. | Hypothetical membrane protein. | 0.753 |
SCL14442.1 | SCL14445.1 | GA0070624_0421 | GA0070624_0422 | Catechol 2,3-dioxygenase. | Asparagine synthase (glutamine-hydrolysing). | 0.506 |
SCL14445.1 | SCL14438.1 | GA0070624_0422 | GA0070624_0420 | Asparagine synthase (glutamine-hydrolysing). | Hypothetical membrane protein. | 0.493 |
SCL14445.1 | SCL14442.1 | GA0070624_0422 | GA0070624_0421 | Asparagine synthase (glutamine-hydrolysing). | Catechol 2,3-dioxygenase. | 0.506 |
SCL24706.1 | SCL14438.1 | GA0070624_2972 | GA0070624_0420 | Translation elongation factor 2 (EF-2/EF-G). | Hypothetical membrane protein. | 0.532 |
SCL33141.1 | SCL14438.1 | GA0070624_4665 | GA0070624_0420 | Ribosomal protection tetracycline resistance protein. | Hypothetical membrane protein. | 0.603 |
SCL36694.1 | SCL14438.1 | GA0070624_5622 | GA0070624_0420 | Phenazine biosynthesis protein phzE. | Hypothetical membrane protein. | 0.606 |
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