STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL17417.1Transcriptional regulator, TetR family. (191 aa)    
Predicted Functional Partners:
SCL17412.1
L-gulonolactone oxidase.
       0.503
SCL14074.1
CysZ protein.
  
     0.478
SCL38024.1
Bifunctional DNA primase/polymerase, N-terminal.
  
     0.438
SCL14740.1
AAA-like domain-containing protein.
  
     0.429
SCL16176.1
Protein of unknown function.
  
     0.418
SCL32613.1
Purine catabolism regulatory protein.
  
     0.406
SCL14527.1
DNA-binding transcriptional activator of the SARP family.
  
   
 0.404
Your Current Organism:
Micromonospora rhizosphaerae
NCBI taxonomy Id: 568872
Other names: CGMCC 4.5599, DSM 45431, JCM 17737, M. rhizosphaerae, Micromonospora rhizosphaerae Wang et al. 2011, Micromonospora sp. 211018, strain 211018
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.