STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCL19021.1propionyl-CoA carboxylase carboxyltransferase subunit. (527 aa)    
Predicted Functional Partners:
SCL18940.1
Biotin carboxyl carrier protein /biotin carboxylase.
 
 0.978
SCL39264.1
methylmalonyl-CoA epimerase.
  
 
  0.944
SCL38165.1
Acetyl/propionyl-CoA carboxylase, alpha subunit.
  
 0.940
SCL38162.1
acetyl-CoA/propionyl-CoA carboxylase carboxyl transferase subunit.
  
  
 
0.927
SCL16104.1
acetyl-CoA carboxylase, biotin carboxylase subunit.
 
 0.923
SCL14879.1
propionyl-CoA carboxylase alpha chain.
 
 0.913
SCL16397.1
Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase).
  
 
 0.900
SCL38159.1
3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
  
 
 0.870
SCL15376.1
acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.868
SCL22223.1
acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.868
Your Current Organism:
Micromonospora rhizosphaerae
NCBI taxonomy Id: 568872
Other names: CGMCC 4.5599, DSM 45431, JCM 17737, M. rhizosphaerae, Micromonospora rhizosphaerae Wang et al. 2011, Micromonospora sp. 211018, strain 211018
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