STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL24179.1Phosphatidylinositol alpha-mannosyltransferase. (400 aa)    
Predicted Functional Partners:
SCL24200.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.816
SCL24190.1
Alpha-1,3-rhamnosyl/mannosyltransferase.
 
     0.812
SCL24184.1
Hypothetical protein.
       0.773
SCL24195.1
Membrane protein involved in the export of O-antigen and teichoic acid.
       0.773
SCL24162.1
Beta-galactosidase.
       0.732
SCL24169.1
Thymidylate kinase.
       0.732
SCL24174.1
Hypothetical protein.
       0.732
SCL39742.1
ATP-dependent DNA helicase, Rep family; Manually curated.
    
   0.572
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.536
SCL28281.1
Maltooligosyl trehalose hydrolase.
   
 0.517
Your Current Organism:
Micromonospora rhizosphaerae
NCBI taxonomy Id: 568872
Other names: CGMCC 4.5599, DSM 45431, JCM 17737, M. rhizosphaerae, Micromonospora rhizosphaerae Wang et al. 2011, Micromonospora sp. 211018, strain 211018
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