STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL24279.1Acetyltransferase (GNAT) family protein. (180 aa)    
Predicted Functional Partners:
SCL26949.1
Hypothetical protein; Manually curated.
  
     0.667
SCL18508.1
Major Facilitator Superfamily protein.
  
     0.549
SCL21474.1
Predicted arabinose efflux permease, MFS family.
  
     0.540
SCL27508.1
Hypothetical protein.
  
     0.524
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
    
  0.522
SCL19662.1
ABC-2 family transporter protein.
  
     0.507
SCL32283.1
MarR family protein.
  
     0.506
SCL23742.1
SpoU rRNA Methylase family protein.
  
     0.497
SCL16134.1
Transcriptional regulator, TetR family; Manually curated.
  
     0.456
SCL23197.1
Saccharopine dehydrogenase NADP binding domain-containing protein.
  
     0.442
Your Current Organism:
Micromonospora rhizosphaerae
NCBI taxonomy Id: 568872
Other names: CGMCC 4.5599, DSM 45431, JCM 17737, M. rhizosphaerae, Micromonospora rhizosphaerae Wang et al. 2011, Micromonospora sp. 211018, strain 211018
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.