STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL27728.1Cell wall-associated hydrolase, NlpC family. (350 aa)    
Predicted Functional Partners:
SCL27733.1
Poly-gamma-glutamate biosynthesis protein PgsC/CapC.
 
     0.932
SCL27739.1
Poly-gamma-glutamate synthase PgsB/CapB.
 
     0.913
SCL27744.1
HAMP domain.
       0.726
SCL39572.1
Hypothetical protein.
  
     0.559
SCL16721.1
Peptidase_C39 like family protein.
  
   0.452
SCL27750.1
Poly-gamma-glutamate synthesis protein (capsule biosynthesis protein).
       0.406
SCL29453.1
Hypothetical protein.
  
     0.400
Your Current Organism:
Micromonospora rhizosphaerae
NCBI taxonomy Id: 568872
Other names: CGMCC 4.5599, DSM 45431, JCM 17737, M. rhizosphaerae, Micromonospora rhizosphaerae Wang et al. 2011, Micromonospora sp. 211018, strain 211018
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.