STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL27874.1Sugar phosphate isomerase/epimerase. (272 aa)    
Predicted Functional Partners:
SCL27859.1
2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
 
  
  0.914
SCL27879.1
Hypothetical protein.
 
     0.835
SCL27854.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
    0.783
SCL35664.1
Hypothetical protein.
  
  
  0.753
SCL35612.1
2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase; Manually curated.
  
  
  0.710
SCL27850.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
    0.703
SCL27845.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
    0.669
SCL35668.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
  
    0.548
SCL28352.1
Threonine dehydrogenase.
  
  
  0.535
SCL35574.1
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Belongs to the TPP enzyme family.
 
 
  0.526
Your Current Organism:
Micromonospora rhizosphaerae
NCBI taxonomy Id: 568872
Other names: CGMCC 4.5599, DSM 45431, JCM 17737, M. rhizosphaerae, Micromonospora rhizosphaerae Wang et al. 2011, Micromonospora sp. 211018, strain 211018
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.