STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL28640.1Putative ABC transport system ATP-binding protein. (226 aa)    
Predicted Functional Partners:
SCL28633.1
FtsX-like permease family protein.
 
 
  0.917
SCL13937.1
Putative ABC transport system permease protein.
  0.905
SCL28645.1
Transcriptional regulator, PadR family.
 
     0.847
SCL40010.1
Putative ABC transport system permease protein.
  0.805
SCL15232.1
Putative ABC transport system permease protein.
  0.749
SCL22802.1
Outer membrane lipoprotein-sorting protein.
   
 
 0.747
SCL27689.1
Putative ABC transport system permease protein.
 
  0.744
SCL34723.1
Putative ABC transport system permease protein.
  0.726
SCL16107.1
Putative ABC transport system permease protein.
  0.710
SCL20817.1
Putative ABC transport system permease protein.
  
  0.702
Your Current Organism:
Micromonospora rhizosphaerae
NCBI taxonomy Id: 568872
Other names: CGMCC 4.5599, DSM 45431, JCM 17737, M. rhizosphaerae, Micromonospora rhizosphaerae Wang et al. 2011, Micromonospora sp. 211018, strain 211018
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.