STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL32634.1Hypothetical protein. (436 aa)    
Predicted Functional Partners:
SCL23412.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
    
  0.912
SCL15835.1
Peptidase inhibitor I9; Belongs to the peptidase S8 family.
  
 0.877
SCL37594.1
Chitinase family 18; Belongs to the glycosyl hydrolase 18 family.
  
 
  0.704
SCL34893.1
PKD repeat.
  
  
  0.676
SCL38335.1
PKD repeat.
  
  
  0.668
SCL14058.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
  
  
  0.663
SCL29631.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
  
  
  0.653
SCL34175.1
O-antigen ligase.
  
     0.638
SCL32473.1
Uncharacterized conserved protein PhnB, glyoxalase superfamily.
  
     0.628
SCL19095.1
Subtilase family protein; Belongs to the peptidase S8 family.
  
   0.618
Your Current Organism:
Micromonospora rhizosphaerae
NCBI taxonomy Id: 568872
Other names: CGMCC 4.5599, DSM 45431, JCM 17737, M. rhizosphaerae, Micromonospora rhizosphaerae Wang et al. 2011, Micromonospora sp. 211018, strain 211018
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