STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL33100.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (222 aa)    
Predicted Functional Partners:
SCL15592.1
PAS/PAC sensor signal transduction histidine kinase.
 0.992
SCL33104.1
Two-component system, OmpR family, sensor histidine kinase MtrB.
 0.985
SCL16927.1
Signal transduction histidine kinase; Manually curated.
  
0.977
SCL14017.1
Two-component system, OmpR family, sensor histidine kinase SenX3.
 0.970
SCL39533.1
Two-component system, OmpR family, sensor kinase.
 0.929
SCL39998.1
Signal transduction histidine kinase.
 
 0.914
SCL22200.1
Signal transduction histidine kinase.
 
 0.908
SCL19823.1
Two-component system, OmpR family, sensor histidine kinase MtrB.
 
 0.888
SCL35422.1
Two-component system, OmpR family, sensor histidine kinase BaeS.
 0.883
SCL34074.1
Signal transduction histidine kinase.
  
  0.877
Your Current Organism:
Micromonospora rhizosphaerae
NCBI taxonomy Id: 568872
Other names: CGMCC 4.5599, DSM 45431, JCM 17737, M. rhizosphaerae, Micromonospora rhizosphaerae Wang et al. 2011, Micromonospora sp. 211018, strain 211018
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