STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL33403.1L-ribulokinase; Belongs to the ribulokinase family. (549 aa)    
Predicted Functional Partners:
SCL26355.1
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.987
SCL39190.1
Xylulokinase; Belongs to the FGGY kinase family.
 
 
 0.915
SCL31812.1
Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase.
 
 
 0.912
SCL25238.1
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
   
 0.900
SCL38526.1
6-phosphogluconate dehydrogenase (decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
  
  
  0.846
SCL32156.1
Ribose 5-phosphate isomerase B.
    
  0.755
SCL26344.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
    
 0.748
SCL33414.1
Fructokinase.
 
  
  0.738
SCL26395.1
Rhamnulokinase.
 
 
 0.726
SCL28727.1
Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase.
  
 
 0.717
Your Current Organism:
Micromonospora rhizosphaerae
NCBI taxonomy Id: 568872
Other names: CGMCC 4.5599, DSM 45431, JCM 17737, M. rhizosphaerae, Micromonospora rhizosphaerae Wang et al. 2011, Micromonospora sp. 211018, strain 211018
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.