Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SCL16421.1 | SCL37151.1 | GA0070624_1012 | GA0070624_5774 | Dynamin family protein. | GTP-binding protein. | 0.656 |
SCL16421.1 | guaA | GA0070624_1012 | GA0070624_6803 | Dynamin family protein. | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.428 |
SCL37151.1 | SCL16421.1 | GA0070624_5774 | GA0070624_1012 | GTP-binding protein. | Dynamin family protein. | 0.656 |
SCL37151.1 | SCL37298.1 | GA0070624_5774 | GA0070624_5824 | GTP-binding protein. | Glutamate synthase (NADH) large subunit. | 0.795 |
SCL37151.1 | der | GA0070624_5774 | GA0070624_3148 | GTP-binding protein. | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.656 |
SCL37151.1 | guaA | GA0070624_5774 | GA0070624_6803 | GTP-binding protein. | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.761 |
SCL37151.1 | rplA | GA0070624_5774 | GA0070624_0133 | GTP-binding protein. | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.830 |
SCL37151.1 | rpsB | GA0070624_5774 | GA0070624_2307 | GTP-binding protein. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.631 |
SCL37151.1 | rpsI | GA0070624_5774 | GA0070624_0055 | GTP-binding protein. | SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family. | 0.677 |
SCL37151.1 | rpsJ | GA0070624_5774 | GA0070624_0122 | GTP-binding protein. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.706 |
SCL37151.1 | tsf | GA0070624_5774 | GA0070624_2308 | GTP-binding protein. | Translation elongation factor Ts (EF-Ts); Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. | 0.618 |
SCL37151.1 | ychF | GA0070624_5774 | GA0070624_6725 | GTP-binding protein. | Hypothetical protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. | 0.627 |
SCL37298.1 | SCL37151.1 | GA0070624_5824 | GA0070624_5774 | Glutamate synthase (NADH) large subunit. | GTP-binding protein. | 0.795 |
SCL37298.1 | guaA | GA0070624_5824 | GA0070624_6803 | Glutamate synthase (NADH) large subunit. | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.970 |
SCL37298.1 | rpsB | GA0070624_5824 | GA0070624_2307 | Glutamate synthase (NADH) large subunit. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.612 |
SCL37298.1 | rpsJ | GA0070624_5824 | GA0070624_0122 | Glutamate synthase (NADH) large subunit. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.647 |
SCL37298.1 | tsf | GA0070624_5824 | GA0070624_2308 | Glutamate synthase (NADH) large subunit. | Translation elongation factor Ts (EF-Ts); Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. | 0.520 |
der | SCL37151.1 | GA0070624_3148 | GA0070624_5774 | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | GTP-binding protein. | 0.656 |
der | guaA | GA0070624_3148 | GA0070624_6803 | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.428 |
der | rplA | GA0070624_3148 | GA0070624_0133 | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.754 |
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