STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL39064.1Signal transduction histidine kinase. (392 aa)    
Predicted Functional Partners:
SCL39070.1
Two component transcriptional regulator, LuxR family.
 
   0.961
SCL39067.1
Hypothetical protein.
     0.891
SCL34905.1
Two component transcriptional regulator, LuxR family.
  
   0.819
SCL34457.1
Two component transcriptional regulator, LuxR family.
  
   0.813
SCL16927.1
Signal transduction histidine kinase; Manually curated.
  
 0.811
SCL20038.1
Two component transcriptional regulator, LuxR family.
  
   0.811
SCL15503.1
Two-component system, NarL family, response regulator DevR.
  
   0.803
SCL37668.1
Two component transcriptional regulator, LuxR family.
 
   0.798
SCL30169.1
Two component transcriptional regulator, LuxR family.
  
   0.794
SCL13112.1
Regulatory protein, luxR family.
  
   0.793
Your Current Organism:
Micromonospora rhizosphaerae
NCBI taxonomy Id: 568872
Other names: CGMCC 4.5599, DSM 45431, JCM 17737, M. rhizosphaerae, Micromonospora rhizosphaerae Wang et al. 2011, Micromonospora sp. 211018, strain 211018
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.