STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH39588.1ABC-2 type transport system permease protein. (662 aa)    
Predicted Functional Partners:
SDH39552.1
ABC-2 type transport system ATP-binding protein.
 
     0.952
SDH39517.1
GntR family transcriptional regulator.
 
  
 0.928
SDH39487.1
Hypothetical protein.
 
     0.579
SDH49375.1
YceG-like family protein.
  
     0.545
SDH39294.1
Aspartyl protease.
 
     0.483
SDI33557.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.433
SDH18806.1
O-antigen ligase.
  
     0.422
SDH73113.1
Protein of unknown function.
  
     0.402
SDH02023.1
SurA N-terminal domain-containing protein.
  
     0.401
Your Current Organism:
Alteribacillus persepolensis
NCBI taxonomy Id: 568899
Other names: A. persepolensis, Alteribacillus persepolensis (Amoozegar et al. 2009) Didari et al. 2012, Bacillus persepolensis, Bacillus persepolensis Amoozegar et al. 2009, Bacillus sp. HS 136, CCM 7595, DSM 21632, JCM 15720, LMG 25222, LMG:25222, strain HS136
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