STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH98926.1ChrR Cupin-like domain-containing protein. (170 aa)    
Predicted Functional Partners:
SDH17243.1
Gentisate 1,2-dioxygenase.
  
     0.703
SDH16662.1
Gentisate 1,2-dioxygenase.
  
     0.687
SDI22489.1
DNA-binding transcriptional regulator, PucR family.
  
    0.673
SDI41216.1
Phenylacetic acid catabolic protein.
  
     0.673
SDI28340.1
Feruloyl esterase.
  
     0.670
SDH16975.1
DNA-binding transcriptional regulator, PucR family.
  
    0.643
SDH98952.1
Hypothetical protein.
       0.618
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
    
  0.613
SDH98979.1
Sugar diacid utilization regulator.
 
     0.601
SDH16629.1
Salicylate hydroxylase.
 
   
 0.571
Your Current Organism:
Alteribacillus persepolensis
NCBI taxonomy Id: 568899
Other names: A. persepolensis, Alteribacillus persepolensis (Amoozegar et al. 2009) Didari et al. 2012, Bacillus persepolensis, Bacillus persepolensis Amoozegar et al. 2009, Bacillus sp. HS 136, CCM 7595, DSM 21632, JCM 15720, LMG 25222, LMG:25222, strain HS136
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