Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDG93288.1 | SDI01445.1 | SAMN05192534_10155 | SAMN05192534_11848 | Hypothetical protein. | Hypothetical protein. | 0.491 |
SDH31151.1 | SDI01445.1 | SAMN05192534_1049 | SAMN05192534_11848 | Uncharacterized protein YoxC, contains an MCP-like domain. | Hypothetical protein. | 0.406 |
SDH31151.1 | rsbW | SAMN05192534_1049 | SAMN05192534_11218 | Uncharacterized protein YoxC, contains an MCP-like domain. | Serine/threonine-protein kinase RsbW; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B). | 0.660 |
SDH42306.1 | SDI01445.1 | SAMN05192534_105113 | SAMN05192534_11848 | Protease I. | Hypothetical protein. | 0.495 |
SDH42306.1 | rsbW | SAMN05192534_105113 | SAMN05192534_11218 | Protease I. | Serine/threonine-protein kinase RsbW; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B). | 0.833 |
SDI01445.1 | SDG93288.1 | SAMN05192534_11848 | SAMN05192534_10155 | Hypothetical protein. | Hypothetical protein. | 0.491 |
SDI01445.1 | SDH31151.1 | SAMN05192534_11848 | SAMN05192534_1049 | Hypothetical protein. | Uncharacterized protein YoxC, contains an MCP-like domain. | 0.406 |
SDI01445.1 | SDH42306.1 | SAMN05192534_11848 | SAMN05192534_105113 | Hypothetical protein. | Protease I. | 0.495 |
SDI01445.1 | SDI01474.1 | SAMN05192534_11848 | SAMN05192534_11849 | Hypothetical protein. | Hypothetical protein. | 0.549 |
SDI01445.1 | SDI01489.1 | SAMN05192534_11848 | SAMN05192534_11850 | Hypothetical protein. | Hypothetical protein. | 0.421 |
SDI01445.1 | rsbW | SAMN05192534_11848 | SAMN05192534_11218 | Hypothetical protein. | Serine/threonine-protein kinase RsbW; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B). | 0.481 |
SDI01474.1 | SDI01445.1 | SAMN05192534_11849 | SAMN05192534_11848 | Hypothetical protein. | Hypothetical protein. | 0.549 |
SDI01474.1 | SDI01489.1 | SAMN05192534_11849 | SAMN05192534_11850 | Hypothetical protein. | Hypothetical protein. | 0.572 |
SDI01489.1 | SDI01445.1 | SAMN05192534_11850 | SAMN05192534_11848 | Hypothetical protein. | Hypothetical protein. | 0.421 |
SDI01489.1 | SDI01474.1 | SAMN05192534_11850 | SAMN05192534_11849 | Hypothetical protein. | Hypothetical protein. | 0.572 |
rsbW | SDH31151.1 | SAMN05192534_11218 | SAMN05192534_1049 | Serine/threonine-protein kinase RsbW; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B). | Uncharacterized protein YoxC, contains an MCP-like domain. | 0.660 |
rsbW | SDH42306.1 | SAMN05192534_11218 | SAMN05192534_105113 | Serine/threonine-protein kinase RsbW; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B). | Protease I. | 0.833 |
rsbW | SDI01445.1 | SAMN05192534_11218 | SAMN05192534_11848 | Serine/threonine-protein kinase RsbW; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B). | Hypothetical protein. | 0.481 |