STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI03839.1Stage II sporulation protein D. (329 aa)    
Predicted Functional Partners:
SDI03802.1
Stage II sporulation protein Q.
 
   
 0.823
SDH07943.1
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
  
 0.813
SDI07812.1
N-acetylmuramoyl-L-alanine amidase.
 
 0.755
SDH47130.1
Stage II sporulation protein P.
  
  
 0.701
SDI12277.1
Sporulation protein YabP.
 
   
 0.668
SDH67645.1
N-acetylmuramoyl-L-alanine amidase.
 
 
 0.632
SDI04500.1
Stage II sporulation protein R.
  
   
 0.590
SDH60703.1
Sporulation protein YunB.
  
     0.576
SDI19569.1
N-acetylmuramoyl-L-alanine amidase.
 
 
 0.565
SDI03583.1
Transcriptional regulator.
 
   
 0.564
Your Current Organism:
Alteribacillus persepolensis
NCBI taxonomy Id: 568899
Other names: A. persepolensis, Alteribacillus persepolensis (Amoozegar et al. 2009) Didari et al. 2012, Bacillus persepolensis, Bacillus persepolensis Amoozegar et al. 2009, Bacillus sp. HS 136, CCM 7595, DSM 21632, JCM 15720, LMG 25222, LMG:25222, strain HS136
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