STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI41594.1Glycine/D-amino acid oxidase. (466 aa)    
Predicted Functional Partners:
SDH05541.1
Glutamate synthase (NADH) large subunit.
  
 
 0.910
gcvT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
  
 0.834
SDH08365.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
 0.753
SDH08395.1
Homocysteine S-methyltransferase.
  
 
 0.753
thiG
Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
  
 
 0.634
SDI41560.1
Betaine-aldehyde dehydrogenase/aminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.612
SDH82871.1
Sulfur carrier protein.
  
 
 0.591
SDH08976.1
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
 0.585
SDH43005.1
Diaminobutyrate aminotransferase apoenzyme; Catalyzes reversively the conversion of L-aspartate beta- semialdehyde (ASA) to L-2,4-diaminobutyrate (DABA) by transamination with L-glutamate; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.556
SDH88934.1
Ornithine cyclodeaminase.
 
 
 0.553
Your Current Organism:
Alteribacillus persepolensis
NCBI taxonomy Id: 568899
Other names: A. persepolensis, Alteribacillus persepolensis (Amoozegar et al. 2009) Didari et al. 2012, Bacillus persepolensis, Bacillus persepolensis Amoozegar et al. 2009, Bacillus sp. HS 136, CCM 7595, DSM 21632, JCM 15720, LMG 25222, LMG:25222, strain HS136
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