STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANC40310.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (119 aa)    
Predicted Functional Partners:
ANC40309.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.809
ANC42028.1
Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.771
ANC42790.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0482 family.
  
     0.763
bssS
BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.755
ANC42163.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.742
ANC42113.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.736
ANC41094.1
Biofilm formation regulator YbaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.734
secM
SecA regulator SecM; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.724
ANC40507.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.718
yobD
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.716
Your Current Organism:
Hafnia alvei
NCBI taxonomy Id: 569
Other names: ATCC 13337, CCUG 41547, CIP 57.31, DSM 30163, Enterobacter aerogenes subsp. hafniae, Enterobacter alvei, Enterobacter hafniae, H. alvei, Hafnia alvei sensu stricto genomosp. 1, LMG 10392, LMG:10392, NCDC 434-68, NCTC 8105, NRRL B-4260
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.