STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANC42446.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (731 aa)    
Predicted Functional Partners:
ANC42447.1
Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.867
ANC42448.1
ClpV1 family T6SS ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ClpA/ClpB family.
       0.780
ANC42443.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.760
ANC42444.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.760
ANC42445.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.760
ANC42442.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.523
hcpA_1
Hcp family T6SS protein CtsH1; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.517
ANC42830.1
Type VI secretion protein VasK; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.505
ANC42440.1
Type VI secretion system ImpA domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.475
ANC42441.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.449
Your Current Organism:
Hafnia alvei
NCBI taxonomy Id: 569
Other names: ATCC 13337, CCUG 41547, CIP 57.31, DSM 30163, Enterobacter aerogenes subsp. hafniae, Enterobacter alvei, Enterobacter hafniae, H. alvei, Hafnia alvei sensu stricto genomosp. 1, LMG 10392, LMG:10392, NCDC 434-68, NCTC 8105, NRRL B-4260
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.