STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PV07_12481CBF domain-containing protein. (293 aa)    
Predicted Functional Partners:
PV07_08876
DRIM domain-containing protein.
   
 0.999
PV07_04586
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.999
PV07_11476
Uncharacterized protein.
   
 0.999
PV07_09803
WD_REPEATS_REGION domain-containing protein.
   
  0.999
PV07_10032
40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.
   
  0.999
PV07_09123
WD_REPEATS_REGION domain-containing protein.
   
 0.999
PV07_07456
WD_REPEATS_REGION domain-containing protein.
   
 0.999
PV07_11762
Ribosomal RNA small subunit methyltransferase NEP1.
  
 0.999
PV07_00407
Uncharacterized protein.
   
 0.999
PV07_01358
Sas10 domain-containing protein.
   
  0.999
Your Current Organism:
Cladophialophora immunda
NCBI taxonomy Id: 569365
Other names: C. immunda, CBS 834.96, Cladophialophora sp. CBS 834.96, Cladophialophora sp. HB-2008
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