PV07_08393 protein (Cladophialophora immunda)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PV07_08393

Uncharacterized protein. (134 aa)

Predicted Functional Partners:

PV07_10344

0.628

PV07_06462

0.590

PV07_04649

0.583

PV07_01510

0.541

PV07_12280

0.541

PV07_05478

0.541

PV07_07973

0.536

PV07_04846

0.536

PV07_07749

0.536

PV07_03599

0.518

Your Current Organism:

Cladophialophora immunda

NCBI taxonomy Id: 569365
Other names: C. immunda, CBS 834.96, Cladophialophora sp. CBS 834.96, Cladophialophora sp. HB-2008

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV07_01510	PV07_04649	A0A0D2BB06	A0A0D2CET2	Uncharacterized protein.	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	0.931
PV07_01510	PV07_05478	A0A0D2BB06	A0A0D2CEZ8	Uncharacterized protein.	Threonine dehydratase.	0.673
PV07_01510	PV07_06462	A0A0D2BB06	A0A0D2C654	Uncharacterized protein.	Acetolactate synthase, small subunit.	0.885
PV07_01510	PV07_07749	A0A0D2BB06	A0A0D2CCM3	Uncharacterized protein.	PALP domain-containing protein.	0.731
PV07_01510	PV07_07973	A0A0D2BB06	A0A0D2AT02	Uncharacterized protein.	PALP domain-containing protein.	0.510
PV07_01510	PV07_08393	A0A0D2BB06	A0A0D2C3X8	Uncharacterized protein.	Uncharacterized protein.	0.541
PV07_03599	PV07_08393	A0A0D2CPZ8	A0A0D2C3X8	Uncharacterized protein.	Uncharacterized protein.	0.518
PV07_04649	PV07_01510	A0A0D2CET2	A0A0D2BB06	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	Uncharacterized protein.	0.931
PV07_04649	PV07_04846	A0A0D2CET2	A0A0D2AUT6	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	Uncharacterized protein.	0.931
PV07_04649	PV07_05478	A0A0D2CET2	A0A0D2CEZ8	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	Threonine dehydratase.	0.931
PV07_04649	PV07_06462	A0A0D2CET2	A0A0D2C654	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	Acetolactate synthase, small subunit.	0.644
PV07_04649	PV07_07749	A0A0D2CET2	A0A0D2CCM3	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	PALP domain-containing protein.	0.939
PV07_04649	PV07_07973	A0A0D2CET2	A0A0D2AT02	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	PALP domain-containing protein.	0.939
PV07_04649	PV07_08393	A0A0D2CET2	A0A0D2C3X8	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	Uncharacterized protein.	0.583
PV07_04649	PV07_12280	A0A0D2CET2	A0A0D2BVE1	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	PALP domain-containing protein.	0.931
PV07_04846	PV07_04649	A0A0D2AUT6	A0A0D2CET2	Uncharacterized protein.	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	0.931
PV07_04846	PV07_06462	A0A0D2AUT6	A0A0D2C654	Uncharacterized protein.	Acetolactate synthase, small subunit.	0.845
PV07_04846	PV07_08393	A0A0D2AUT6	A0A0D2C3X8	Uncharacterized protein.	Uncharacterized protein.	0.536
PV07_05478	PV07_01510	A0A0D2CEZ8	A0A0D2BB06	Threonine dehydratase.	Uncharacterized protein.	0.673
PV07_05478	PV07_04649	A0A0D2CEZ8	A0A0D2CET2	Threonine dehydratase.	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	0.931