STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APD08672.1Membrane lipoprotein. (374 aa)    
Predicted Functional Partners:
APD08673.1
Sugar ABC transporter ATP-binding protein.
 
 0.990
APD08373.1
Sugar ABC transporter ATP-binding protein.
 
 0.975
APD08371.1
Sugar ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.971
APD08372.1
Sugar ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.968
APD08370.1
Membrane lipoprotein.
  
  
 
0.923
ligA
DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
       0.616
APD10100.1
Indigoidine synthase A.
 
     0.545
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.408
APD08886.1
5'-nucleotidase; Belongs to the 5'-nucleotidase family.
 
  
 0.405
Your Current Organism:
Thermus brockianus
NCBI taxonomy Id: 56956
Other names: JCM 11602, NCIB 12676, NCIB:12676, NCIMB 12676, T. brockianus, strain YS38
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.