STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APD09029.1Type IV prepilin peptidase PilD. (356 aa)    
Predicted Functional Partners:
APD09504.1
Pilus assembly protein PilC.
 
  
 0.912
APD08911.1
Type IV pilus assembly protein PilF.
 
 
 0.900
APD09505.1
Type IV pilus assembly protein PilF.
 
 
 0.873
APD09378.1
Competence protein PilM.
 
  
 0.838
APD09450.1
Pili retraction protein PilT.
 
   
 0.815
APD08912.1
Type IV pilus retraction protein PilT.
 
   
 0.814
APD09291.1
Competence protein ComEC.
 
  
 0.777
APD08789.1
Competence protein DprA.
  
  
 0.710
APD09292.1
Competence protein ComEA.
   
  
 0.669
pilE_2
Fimbrial protein.
 
  
 0.620
Your Current Organism:
Thermus brockianus
NCBI taxonomy Id: 56956
Other names: JCM 11602, NCIB 12676, NCIB:12676, NCIMB 12676, T. brockianus, strain YS38
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