STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APD09504.1Pilus assembly protein PilC. (396 aa)    
Predicted Functional Partners:
APD09505.1
Type IV pilus assembly protein PilF.
 
 0.991
APD08911.1
Type IV pilus assembly protein PilF.
 
 0.961
pulG
Type II secretion system protein G.
 
  
 0.918
pilE_2
Fimbrial protein.
 
  
 0.915
APD09029.1
Type IV prepilin peptidase PilD.
 
  
 0.912
APD09378.1
Competence protein PilM.
 
 
 
 0.903
APD09511.1
Hypothetical protein.
 
  
 0.888
APD08912.1
Type IV pilus retraction protein PilT.
  
 0.819
APD09450.1
Pili retraction protein PilT.
  
 0.819
APD09506.1
Hypothetical protein.
       0.781
Your Current Organism:
Thermus brockianus
NCBI taxonomy Id: 56956
Other names: JCM 11602, NCIB 12676, NCIB:12676, NCIMB 12676, T. brockianus, strain YS38
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.