Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
nreCLuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)    
Predicted Functional Partners:
nreB
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
degS
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.978
desK
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.952
nreA
NreA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.942
vraS
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.900
narJ
Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.772
narZ
Nitrate reductase; With NarYV catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli; expression of nitrate reductase Z is not dependent on nitrate levels; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.756
narI
Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.734
narH
Nitrate reductase; With NarGJI catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.734
narT
Nitrate transporter NarT; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.665
Your Current Organism:
Staphylococcus microti
NCBI taxonomy Id: 569857
Other names: CCM 4903, CCUG 55861, DSM 22147, NCTC 13832, S. microti, Staphylococcus microti Novakova et al. 2010, Staphylococcus sp. CCM 4903, Staphylococcus sp. CCM 4904, strain 4005-LJ(m)
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