Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
vraR_2LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)    
Predicted Functional Partners:
vraS
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
degS
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.977
KIX91250.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.943
desK
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.942
nreB
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.900
KIX91249.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.853
map
Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
       0.726
KIX91247.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.651
graS
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.630
graR
Response regulator GraR; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.549
Your Current Organism:
Staphylococcus microti
NCBI taxonomy Id: 569857
Other names: CCM 4903, CCUG 55861, DSM 22147, NCTC 13832, S. microti, Staphylococcus microti Novakova et al. 2010, Staphylococcus sp. CCM 4903, Staphylococcus sp. CCM 4904, strain 4005-LJ(m)
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