Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KIX91253.1Carbonic anhydrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (191 aa)    
Predicted Functional Partners:
yihY
Ribonuclease BN; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0761 family.
  
    0.794
KIX91255.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.661
ptpA
Protein tyrosine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
       0.639
nirC
Formate/nitrite transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.586
focA
Formate/nitrite transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.586
ychM
Sulfate permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.565
pepS
Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.515
KIX91276.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.448
xpt
Xanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis.
   
    0.448
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.448
Your Current Organism:
Staphylococcus microti
NCBI taxonomy Id: 569857
Other names: CCM 4903, CCUG 55861, DSM 22147, NCTC 13832, S. microti, Staphylococcus microti Novakova et al. 2010, Staphylococcus sp. CCM 4903, Staphylococcus sp. CCM 4904, strain 4005-LJ(m)
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