STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csm6CRISPR-associated protein Csm6; Derived by automated computational analysis using gene prediction method: Protein Homology. (419 aa)    
Predicted Functional Partners:
KIX91210.1
CRISPR-associated protein Csm4; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.904
csm5
CRISPR-associated protein Csm5; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.903
csm3
CRISPR-associated protein Cmr4; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.891
csm2
CRISPR-associated protein Csm2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.879
csm1
CRISPR-associated protein Csm1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.829
KIX91213.1
CRISPR-associated protein Cas6; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.827
cas2_1
CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
     
 0.770
cas1_1
CRISPR-associated protein Cas1; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.751
KIX91214.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.714
Your Current Organism:
Staphylococcus microti
NCBI taxonomy Id: 569857
Other names: CCM 4903, CCUG 55861, DSM 22147, NCTC 13832, S. microti, Staphylococcus microti Novakova et al. 2010, Staphylococcus sp. CCM 4903, Staphylococcus sp. CCM 4904, strain 4005-LJ(m)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.