STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ychMSulfate permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)    
Predicted Functional Partners:
yxeP_2
N-acetyl-L,L-diaminopimelate deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.858
hmrB
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
   0.803
yghA
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.754
sbcD_2
DNA repair exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.730
KIX90014.1
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.730
sbcD_1
Exonuclease; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
   
   0.730
fabG_2
3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.667
bdhA
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
   0.667
fabG_4
3-ketoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.667
fabG_3
3-ketoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.667
Your Current Organism:
Staphylococcus microti
NCBI taxonomy Id: 569857
Other names: CCM 4903, CCUG 55861, DSM 22147, NCTC 13832, S. microti, Staphylococcus microti Novakova et al. 2010, Staphylococcus sp. CCM 4903, Staphylococcus sp. CCM 4904, strain 4005-LJ(m)
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