STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phePAmino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (483 aa)    
Predicted Functional Partners:
treC
Trehalose-6-phosphate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.879
ygdD
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.772
KIX90739.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.766
ung
uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
       0.766
pdxK
Pyridoxal kinase; Catalyzes the phosphorylation of three vitamin B6 precursors, pyridoxal, pyridoxine and pyridoxamine; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.723
mdlB
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.501
lysP_2
Gamma-aminobutyrate permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.495
KIX91038.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.435
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
    
   0.433
KIX91055.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.419
Your Current Organism:
Staphylococcus microti
NCBI taxonomy Id: 569857
Other names: CCM 4903, CCUG 55861, DSM 22147, NCTC 13832, S. microti, Staphylococcus microti Novakova et al. 2010, Staphylococcus sp. CCM 4903, Staphylococcus sp. CCM 4904, strain 4005-LJ(m)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.