Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yqfAHemolysin III; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)    
Predicted Functional Partners:
KIX89920.1
Uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.858
ydjM
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.767
nucA
Thermonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.613
hsrA
Multidrug MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.594
KIX90140.1
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
      
 0.563
secDF
Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
      
 0.550
sepA
Multidrug resistance protein SepA; Involved in multidrug efflux. Belongs to the multidrug resistance efflux pump SepA family.
       0.545
KIX89918.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.504
ytfL
Transporter associated domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.486
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.472
Your Current Organism:
Staphylococcus microti
NCBI taxonomy Id: 569857
Other names: CCM 4903, CCUG 55861, DSM 22147, NCTC 13832, S. microti, Staphylococcus microti Novakova et al. 2010, Staphylococcus sp. CCM 4903, Staphylococcus sp. CCM 4904, strain 4005-LJ(m)
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