STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO03517.1FecR protein. (787 aa)    
Predicted Functional Partners:
SEP09472.1
Regulatory P domain of the subtilisin-like proprotein convertase.
  
 0.997
SEO03486.1
PKD repeat-containing protein.
 
  
  0.959
SEO03455.1
Adenylate cyclase.
 
     0.949
SEO21128.1
DNA translocase FtsK.
    
   0.661
SEO03424.1
Catechol 2,3-dioxygenase.
  
    0.533
SEO38660.1
DNA-binding transcriptional regulator, GntR family.
  
     0.484
SEO38499.1
Tat (twin-arginine translocation) pathway signal sequence.
  
     0.475
SEO50622.1
Phage conserved hypothetical protein, phiE125 gp8 family.
  
 0.468
SEO82305.1
acyl-CoA thioesterase-1.
    
  0.454
SEO58605.1
S-adenosyl-L-methionine methyltransferase.
  
     0.445
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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