STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO03537.1Hypothetical protein. (1054 aa)    
Predicted Functional Partners:
SEP09472.1
Regulatory P domain of the subtilisin-like proprotein convertase.
 
 
0.824
SEP21532.1
Hemoglobin/transferrin/lactoferrin receptor protein.
    
 
 0.646
SEP23783.1
Type II secretory pathway component GspD/PulD (secretin); Belongs to the bacterial secretin family.
 
  
 0.596
SEO65054.1
Outer membrane autotransporter barrel domain-containing protein.
  
 
 0.577
SEP08117.1
Hemolysin-type calcium-binding repeat-containing protein.
 
0.513
SEP13801.1
Predicted arabinose efflux permease, MFS family.
  
     0.482
SEP09303.1
Protein of unknown function.
 
 
   0.461
SEO50806.1
TIGR02217 family protein.
   
   0.421
SEO50831.1
Phage conserved hypothetical protein BR0599.
   
   0.421
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.