STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO05096.1TRAP-type C4-dicarboxylate transport system, substrate-binding protein. (340 aa)    
Predicted Functional Partners:
SEO05071.1
Tripartite ATP-independent transporter, DctQ component.
 
 
  0.991
SEO05038.1
TRAP transporter, DctM subunit.
 
 
  0.990
SEO66580.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
    0.803
SEP16632.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
    0.792
SEO66544.1
TRAP transporter, DctM subunit.
  
    0.770
SEO18188.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
    0.751
SEP16616.1
TRAP transporter, DctM subunit.
  
    0.728
SEO18167.1
TRAP transporter, DctM subunit.
  
    0.597
SEP03292.1
TRAP transporter, DctM subunit.
  
    0.588
SEP12319.1
TRAP transporter, DctM subunit.
  
    0.585
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.