STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO05235.1DNA-binding transcriptional regulator, AcrR family. (198 aa)    
Predicted Functional Partners:
SEO05180.1
acyl-CoA thioesterase.
 
     0.847
SEO05153.1
2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase.
 
     0.789
SEO05202.1
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
       0.778
SEO05291.1
1,2-phenylacetyl-CoA epoxidase, catalytic subunit.
  
     0.711
SEO05126.1
3-hydroxyacyl-CoA dehydrogenase.
 
  
 0.691
SEO04978.1
Transcriptional regulator, PaaX family.
 
     0.619
SEO05262.1
EamA domain-containing membrane protein RarD.
       0.556
SEO05096.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.552
SEO05071.1
Tripartite ATP-independent transporter, DctQ component.
 
     0.504
SEO05316.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
  
 0.499
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.