STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO09327.1Predicted amidohydrolase. (276 aa)    
Predicted Functional Partners:
SEO09298.1
DNA-binding transcriptional regulator, MarR family.
      0.944
SEO09355.1
Glutaredoxin 3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
    
  0.865
SEO59726.1
Glutamate synthase (NADPH) large subunit.
    
  0.846
SEO09379.1
comF family protein.
     
 0.810
SEO82229.1
Dihydroorotate oxidase B, catalytic subunit.
  
 0.755
SEO09410.1
Methyltransferase domain-containing protein.
 
     0.743
SEO74672.1
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
 
  0.688
SEO37277.1
Predicted amidohydrolase.
  
  
0.645
SEO64635.1
Indolepyruvate ferredoxin oxidoreductase.
  
 
  0.641
SEO95600.1
Indolepyruvate ferredoxin oxidoreductase.
  
 
  0.641
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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