STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO18141.1DNA-binding transcriptional regulator, MarR family. (167 aa)    
Predicted Functional Partners:
SEO18188.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.846
SEO18209.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.830
SEO18167.1
TRAP transporter, DctM subunit.
       0.773
SEP11277.1
P-hydroxybenzoate 3-monooxygenase.
  
    0.547
SEO38887.1
DNA-binding transcriptional regulator, MarR family.
  
     0.529
SEO18230.1
3-hydroxyisobutyrate dehydrogenase.
       0.505
ilvD
Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family.
       0.505
SEO18281.1
Hydroxypyruvate isomerase; Belongs to the hyi family.
 
     0.462
SEO33246.1
2-polyprenyl-6-methoxyphenol hydroxylase.
  
    0.419
SEO52450.1
Sulfur dehydrogenase subunit SoxD.
   
 
  0.409
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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