STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO18188.1TRAP-type C4-dicarboxylate transport system, small permease component. (170 aa)    
Predicted Functional Partners:
SEO18209.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
    0.913
SEO18167.1
TRAP transporter, DctM subunit.
 
  0.890
SEO18141.1
DNA-binding transcriptional regulator, MarR family.
 
     0.846
SEO66606.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.788
SEP16650.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.776
SEO05096.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.751
SEO05038.1
TRAP transporter, DctM subunit.
  
  0.671
SEO33175.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.639
SEO66544.1
TRAP transporter, DctM subunit.
  
  0.619
SEP16616.1
TRAP transporter, DctM subunit.
  
  0.589
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.